notmuch stuff

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@@ -19,6 +19,7 @@ The ~early-init.el~ file is the first file loaded during ~emacs~ initialisation.
 I want to configure the frame size if I am in a non-tiling window manager, for this I define the ~with-desktop-session~ macro, inspired by [[https://protesilaos.com/emacs/dotemacs][Protesilaos Stavrou's emacs configuration]].
 
 #+begin_src emacs-lisp :tangle "early-init.el"
+  ;;; -*- lexical-binding: t -*-
   (defvar luj/tiling-window-manager-regexp "hyprland\\|none\\+exwm"
     "Regular expression to tiling window managers.
   See definition of the `with-desktop-session' macro.")
@@ -75,8 +76,8 @@ Let's setup also additional frame settings that are nice to have.
 I am using the ~elpaca~ package manager, that needs to be bootstrapped because it is not included in ~emacs~.
 
 #+begin_src emacs-lisp :tangle "early-init.el"
-  (setq elpaca-core-date '(20250301))
+  (setq elpaca-core-date '(20250621))
-  (defvar elpaca-installer-version 0.10)
+  (defvar elpaca-installer-version 0.11)
   (defvar elpaca-directory (expand-file-name "elpaca/" user-emacs-directory))
   (defvar elpaca-builds-directory (expand-file-name "builds/" elpaca-directory))
   (defvar elpaca-repos-directory (expand-file-name "repos/" elpaca-directory))
@@ -111,7 +112,7 @@ I am using the ~elpaca~ package manager, that needs to be bootstrapped because i
     (unless (require 'elpaca-autoloads nil t)
       (require 'elpaca)
       (elpaca-generate-autoloads "elpaca" repo)
-      (load "./elpaca-autoloads")))
+      (let ((load-source-file-function nil)) (load "./elpaca-autoloads"))))
   (add-hook 'after-init-hook #'elpaca-process-queues)
   (elpaca `(,@elpaca-order))
   (setq package-enable-at-startup nil)
@@ -245,6 +246,17 @@ I use the ~doom-modeline~, it's nice and clean.
   (doom-modeline-mode 1))
 #+end_src
 
+** Long lines...
+
+... Are painful
+
+#+begin_src emacs-lisp :tangle "init.el"
+  (setq-default bidi-paragraph-direction 'left-to-right)
+  (setq bidi-inhibit-bpa t)
+  (global-so-long-mode 1)
+#+end_src
+
+
 
 ** Nerd icons
 
@@ -313,10 +325,14 @@ Nerd icons are a nice addition to the UI, I try to enable them wherever I can.
            :default-height 150)
           (presentation
            :inherit medium
-           :default-height 180)
+           :default-height 165)
           (jumbo
            :inherit medium
            :default-height 260)
+  	(dell-docked
+           :inherit medium
+           :default-height 200)
+
           (t
            :default-weight regular
            :default-slant normal
@@ -859,6 +875,7 @@ To add new tasks to my agenda, I first use a capture template to generally write
   		 "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
   		("h" "Habit" entry (file "~/dev/todos/inbox.org")
   		 "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"%<<%Y-%m-%d %a .+1d/3d>>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n")))))
+  (advice-add 'org-agenda-quit :before 'org-save-all-org-buffers)
 #+end_src
 
 I will then refile the tasks in inbox to any of my agenda files sections.
@@ -1130,7 +1147,6 @@ I use ~notmuch~ to index and search through my large mail inboxes.
   (use-package notmuch
     :ensure t
     :init
-
     (setq notmuch-search-oldest-first nil)
     (setq notmuch-show-logo nil
   	 notmuch-column-control 1.0
@@ -1144,31 +1160,70 @@ I use ~notmuch~ to index and search through my large mail inboxes.
        `(( :name "telecom/inbox"
            :query "tag:inbox and tag:telecom and folder:telecom/INBOX"
            :sort-order newest-first
-            :key ,(kbd "i"))
+           :key ,(kbd "t i"))
          ( :name "telecom/CGT"
            :query "tag:telecom and tag:inbox and tag:cgt"
            :sort-order newest-first
-            :key ,(kbd "u"))
+           :key ,(kbd "t c"))
          ( :name "telecom/all"
            :query "tag:telecom and tag:inbox"
            :sort-order newest-first
-            :key ,(kbd "o"))
+           :key ,(kbd "t a"))
          ( :name "work/inbox"
-            :query "tag:work and folder:work/INBOX"
+           :query "tag:work and tag:inbox and folder:work/INBOX"
            :sort-order newest-first
-            :key ,(kbd "p"))
+           :key ,(kbd "w i"))
   	( :name "work/RB"
            :query "tag:work and tag:inbox and tag:reproducible-builds"
            :sort-order newest-first
-            :key ,(kbd "c"))
+  	  :key ,(kbd "w r"))
   	( :name "work/bluehats"
   	  :query "tag:work and tag:inbox and tag:bluehats"
   	  :sort-order newest-first
-  	  :key ,(kbd "p"))
+  	  :key ,(kbd "w b"))
   	( :name "work/all"
   	  :query "tag:work and tag:inbox"
   	  :sort-order newest-first
-  	  :key ,(kbd "p"))))
+  	  :key ,(kbd "w a"))
+  	( :name "ens/inbox"
+  	  :query "tag:inbox and tag:ens"
+  	  :sort-order newest-first
+           :key ,(kbd "e i"))
+  	( :name "dgnum/inbox"
+           :query "tag:inbox and tag:dgnum and folder:dgnum/INBOX"
+           :sort-order newest-first
+           :key ,(kbd "d i"))
+  	( :name "dgnum/bureau"
+  	  :query "tag:inbox and tag:dgnum and tag:bureau"
+  	  :sort-order newest-first
+  	  :key ,(kbd "d b"))
+  	( :name "dgnum/federez"
+  	  :query "tag:inbox and tag:dgnum and tag:federez"
+  	  :sort-order newest-first
+  	  :key ,(kbd "d f"))
+  	( :name "dgnum/nixcon"
+  	  :query "tag:inbox and tag:dgnum and tag:nixcon"
+  	  :sort-order newest-first
+  	  :key ,(kbd "d n"))
+  	( :name "dgnum/fai"
+  	  :query "tag:inbox and tag:dgnum and tag:fai"
+  	  :sort-order newest-first
+  	  :key ,(kbd "d f"))
+  	( :name "dgnum/all"
+  	  :query "tag:inbox and tag:dgnum"
+  	  :sort-order newest-first
+  	  :key ,(kbd "d a"))
+  	))
+
+    (setq notmuch-archive-tags '("+archive" "-inbox" "-unread" "-junk")
+  	 notmuch-message-replied-tags '("+replied")
+  	 notmuch-message-deleted-tags '("+trash" "-inbox" "-unread" "-junk")
+  	 notmuch-message-forwarded-tags '("+forwarded")
+  	 notmuch-show-mark-read-tags '("-unread")
+  	 notmuch-draft-tags '("+draft")
+  	 notmuch-draft-folder "drafts"
+  	 notmuch-draft-save-plaintext 'ask)
+
 
     (setq notmuch-search-result-format
        '(("date" . "%12s  ")
@@ -1196,15 +1251,106 @@ I use ~notmuch~ to index and search through my large mail inboxes.
     (setq message-sendmail-envelope-from 'header)
     (setq mail-envelope-from 'header))
 
+#+end_src
+
+** Composition
+
+#+begin_src emacs-lisp :tangle "init.el"
+  (use-package notmuch
+    :ensure nil
+    :after notmuch
+    :defer t
+    :config
+    (setq notmuch-mua-compose-in 'current-window)
+    (setq notmuch-mua-hidden-headers nil)
+    (setq notmuch-always-prompt-for-sender t)
+    (setq notmuch-mua-cite-function 'message-cite-original-without-signature)
+    (setq notmuch-mua-reply-insert-header-p-function 'notmuch-show-reply-insert-header-p-never)
+    (setq notmuch-mua-user-agent-function nil)
+    (setq notmuch-maildir-use-notmuch-insert t)
+    (setq notmuch-crypto-process-mime t)
+    (setq notmuch-crypto-get-keys-asynchronously t)
+    (setq notmuch-mua-attachment-regexp   ; see `notmuch-mua-send-hook'
+        (concat "\\b\\(attache\?ment\\|attached\\|attach\\|"
+                "pi[èe]ce\s+jointe?\\|"
+                "συνημμ[εέ]νο\\|επισυν[αά]πτω\\)\\b")))
+#+end_src
+
+** Reading messages
+
+#+begin_src emacs-lisp :tangle "init.el"
+  (use-package notmuch
+    :ensure nil
+    :after notmuch
+    :defer t
+    :config
+    (setq notmuch-show-relative-dates t)
+    (setq notmuch-show-all-multipart/alternative-parts nil)
+    (setq notmuch-show-indent-messages-width 0)
+    (setq notmuch-show-indent-multipart nil)
+    (setq notmuch-show-part-button-default-action 'notmuch-show-view-part)
+    (setq notmuch-wash-wrap-lines-length 120)
+    (setq notmuch-unthreaded-show-out nil)
+    (setq notmuch-message-headers '("To" "Cc" "Subject" "Date"))
+    (setq notmuch-message-headers-visible t))
+#+end_src
+
+
+** Bindings
+
+#+begin_src emacs-lisp :tangle "init.el"
+  (use-package notmuch
+    :ensure nil
+    :after notmuch
+    :demand t
+    :hook
+    (notmuch-mua-send . notmuch-mua-attachment-check)
+    :config
+    (defun notmuch-tag-then-archive ()
+      "First prompt for tags to add via notmuch-search-tag, then archive the thread."
+      (interactive)
+      (call-interactively 'notmuch-search-tag)
+      (notmuch-search-archive-thread))
+    
+    (defun notmuch-search-message-delete ()
+      (interactive)
+      "Delete message and select next message."
+      (notmuch-search-tag notmuch-message-deleted-tags)
+      (notmuch-search-next-thread))
+   
+    (remove-hook 'notmuch-show-hook #'notmuch-show-turn-on-visual-line-mode)
+    (remove-hook 'notmuch-search-hook #'notmuch-hl-line-mode) ; Check my `lin' package
+    :bind
+    ( :map global-map
+      ("C-c m" . notmuch-jump-search)
+      ("C-x m" . notmuch-mua-new-mail)
+      :map notmuch-search-mode-map
+      ("A" . notmuch-tag-then-archive)
+      ("a" . notmuch-search-archive-thread)
+      ("D" . notmuch-search-message-delete)
+      ("/" . notmuch-search-filter) ; alias for l
+      ("r" . notmuch-search-reply-to-thread) ; easier to reply to all by default
+      ("R" . notmuch-search-reply-to-thread-sender)
+      :map notmuch-show-mode-map
+      ("a" . nil) 
+      ("A" . nil)
+      ("r" . notmuch-show-reply)
+      ("R" . notmuch-show-reply-sender)
+      :map notmuch-hello-mode-map
+      ("C-<tab>" . nil)))
+#+end_src
+
+
+
+
+#+begin_src emacs-lisp :tangle "init.el"  
   (use-package notmuch-addr
     :ensure t)
   (with-eval-after-load 'notmuch-address
     (notmuch-addr-setup))
 
-
   (setq sendmail-program "msmtp"
         send-mail-function 'smtpmail-send-it
-        message-sendmail-f-is-evil t
         message-sendmail-envelope-from 'header
         message-send-mail-function 'message-send-mail-with-sendmail)
 
@@ -1284,6 +1430,32 @@ I want the number of unread messages in my ~notmuch-hello~ buffer.
   (advice-add 'notmuch-hello-insert-buttons :override #'luj/notmuch-hello-insert-buttons)
 #+end_src
 
+Let's add an indicator in the modeline, as well:
+
+#+begin_src emacs-lisp :tangle "init.el"
+  (use-package notmuch-indicator
+    :ensure t
+    :after notmuch
+    :config
+    (setq notmuch-indicator-args
+  	'(( :terms "tag:unread and tag:inbox and tag:telecom and folder:telecom/INBOX"
+              :label "🔍 ")
+  	  ( :terms "tag:unread and tag:inbox and tag:work and folder:work/INBOX"
+  	    :label "🚧 ")
+            ( :terms "tag:unread and tag:inbox and tag:ens"
+  	    :label "🎓 ")
+  	  ( :terms "tag:unread and tag:inbox and tag:dgnum and folder:dgnum/INBOX"
+  	    :label "💾 "))
+
+          notmuch-indicator-refresh-count 60
+  	notmuch-indicator-hide-empty-counters t
+  	notmuch-indicator-notmuch-config-file "/home/julien/.config/notmuch/default/config"
+          notmuch-indicator-force-refresh-commands '(notmuch-refresh-this-buffer))
+
+    (notmuch-indicator-mode 1))
+    
+#+end_src
+
 
 
 * Programming
@@ -1402,6 +1574,8 @@ The compilation buffer is very useful to launch ephemeral processes.
   	 :config
   	 (add-hook 'eshell-load-hook #'eat-eshell-mode)))
 
+  (use-package vterm
+    :ensure t)
 
   (defun eat-meow-setup ()
     (add-hook 'meow-normal-mode-hook 'eat-emacs-mode nil t)
@@ -1494,6 +1668,10 @@ I don't like how I must open another buffer to get documentation, so let's go wi
     :after eglot
     :hook
     (python-mode . eglot-ensure))
+
+  (org-babel-do-load-languages
+ 'org-babel-load-languages
+ '((python . t)))
 #+end_src
 
 
@@ -1623,3 +1801,10 @@ Well, why not use it for PDF? Also integrate with /LaTeX/ etc.
     :ensure (:host github :repo "havarddj/typst-preview.el"))
 
 #+end_src
+
+*** Lisp
+
+#+begin_src emacs-lisp :tangle "init.el"
+  (use-package sly
+    :ensure t)
+#+end_src