feat: added zotero, courtesy of @camillemndn

lib/default.nix

@@ -38,6 +38,7 @@ in
                 mesonFlags = oldAttrs.mesonFlags ++ [ "-Dexperimental=true" ];
               });
               tinystatus = prev.pkgs.callPackage ../packages/tinystatus { };
+              zotero = prev.pkgs.callPackage ../packages/zotero { };
               jackett = prev.unstable.jackett;
               radarr = prev.unstable.radarr;
               flaresolverr = prev.pkgs.callPackage ../packages/flaresolverr { };

machines/macintosh/home-julien.nix

@@ -72,6 +72,7 @@
           evince
           mosh
           obsidian
+          zotero
           flameshot
           kitty
           networkmanagerapplet

packages/zotero/default.nix

@@ -0,0 +1,385 @@
+{ lib
+, stdenv
+, buildNpmPackage
+, fetchFromGitHub
+, fetchzip
+, fetchurl
+, firefox-esr-102-unwrapped
+, makeWrapper
+, makeDesktopItem
+, python3
+, unzip
+, zip
+, perl
+, rsync
+, wrapGAppsHook
+, gsettings-desktop-schemas
+, glib
+, gtk3
+, gnome
+, dconf
+}:
+
+let
+  pname = "zotero-dev";
+  version = "7.0.0";
+  rev = "096a3c5f2f57fffdecf001981129e13a1791ad89";
+
+  meta = with lib; {
+    description = "Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share your research sources";
+    homepage = "https://github.com/zotero/zotero";
+    license = licenses.agpl3Only;
+    maintainers = with maintainers; [ camillemndn ];
+    platforms = platforms.all;
+  };
+
+  pdftools = let pdftools-version = "0.0.5"; in
+    fetchzip {
+      url = "https://zotero-download.s3.amazonaws.com/pdftools/pdftools-${pdftools-version}.tar.gz";
+      hash = "sha256-cvd0cJcuhSd2BTgRc5mz0bP9DakEKG/LK2onKOhes04=";
+      stripRoot = false;
+    };
+
+  zotero-client =
+    let
+      src = fetchFromGitHub {
+        owner = "zotero";
+        repo = "zotero";
+        inherit rev;
+        hash = "sha256-XGpk2CYgdaFCJJJc2XhW2fVD+dbACUkGClgwLoNMOoM=";
+        fetchSubmodules = true;
+      };
+
+      npmFlags = [ "--legacy-peer-deps" ];
+      NODE_OPTIONS = "--openssl-legacy-provider";
+
+      single-file = buildNpmPackage {
+        pname = "${pname}-single-file";
+        src = fetchFromGitHub {
+          owner = "gildas-lormeau";
+          repo = "SingleFile";
+          rev = "999976a20afb51a18da4abb42f434eac99796e84";
+          hash = "sha256-fHKVn9DTwshfBXf0nxCk0MLY1fEiQXD/SZPG1bICHo8=";
+        };
+        inherit version npmFlags NODE_OPTIONS meta;
+        npmDepsHash = "sha256-L4LuD7n8c42TPpbLWuJzeM27xcsXVdBnMTqNvRZMdz8=";
+        dontNpmBuild = true;
+      };
+
+      xpcom-utilities = buildNpmPackage {
+        pname = "${pname}-xpcom-utilities";
+        src = fetchFromGitHub {
+          owner = "zotero";
+          repo = "utilities";
+          rev = "b93f16dba483891c0ab4627cbaa303de5c7fa0c0";
+          hash = "sha256-Oz3h6aGorAm+Y5JZSclfz40YRj+uSPW2a5jgQWszLsk=";
+        };
+        inherit version npmFlags NODE_OPTIONS meta;
+        npmDepsHash = "sha256-tWDADhAeXG0HSvFnpdGOya3CjSb0i2aR3E1Y3r1J81o=";
+        dontNpmBuild = true;
+      };
+
+      note-editor = buildNpmPackage {
+        pname = "${pname}-note-editor";
+        src = fetchFromGitHub {
+          owner = "zotero";
+          repo = "note-editor";
+          rev = "076f5b3d3609051b9cba3cd68c4bb22746187834";
+          hash = "sha256-ZDmb3DQttftfS4w5+HlkTXRxhRYftBh1bm6MI+RBvII=";
+        };
+        inherit version npmFlags NODE_OPTIONS meta;
+        npmDepsHash = "sha256-yu2s4V2hB07eS0INVxQXU7YeWYmR3p4JPxKWuCK3Iys=";
+
+        postInstall = ''
+          cp -r build $out/lib/node_modules/zotero-note-editor/build
+        '';
+      };
+
+      translators = buildNpmPackage {
+        pname = "${pname}-translators";
+        src = fetchFromGitHub {
+          owner = "zotero";
+          repo = "translators";
+          rev = "3a9544d7b0b6fdcb6cdcbc8c08392f91d20d99b4";
+          hash = "sha256-XX1iBjuaFpmtkKTHuFPTtZOcFZk+oF8C8d2DPnENjV4=";
+        };
+        inherit version npmFlags NODE_OPTIONS meta;
+        npmDepsHash = "sha256-WDMOsklYKIurQw80Yh/mYQ9xmcHo3Yfkjj5+btqeie0=";
+
+        postPatch = ''
+          rm package-lock.json
+          cp ${./translator-lock.json} package-lock.json
+          sed -i '/eslint-plugin-zotero-translator/d' package.json
+          echo "chromedriver_skip_download=true" >> .npmrc  
+        '';
+
+        dontNpmBuild = true;
+      };
+
+      pdf-reader-pdfjs = buildNpmPackage {
+        pname = "${pname}-pdf-reader-pdfjs";
+        src = fetchFromGitHub {
+          owner = "zotero";
+          repo = "pdf.js";
+          rev = "336247a15be77f2e253599f810a8cda107171566";
+          hash = "sha256-GBEBTyFMh+zi0KiHLNGfZi/XW9mhm3x0uCJkA7ml7mk=";
+        };
+        inherit version npmFlags NODE_OPTIONS meta;
+        npmDepsHash = "sha256-9e90iIKwWyBq68q/CKn+7laJwPFtJaZtblcWpIEDSXw=";
+        makeCacheWritable = true;
+
+        postPatch = ''
+          sed -i '/"name": "pdf.js"/a "version": "1.0.0",' package.json
+          sed -i '/"name": "pdf.js"/a "version": "1.0.0",' package-lock.json
+        '';
+
+        #dontNpmBuild = true;
+
+        buildPhase = ''
+          node_modules/.bin/gulp generic
+        '';
+
+        postInstall = ''
+          cp -r build $out/lib/node_modules/pdf.js/build
+        '';
+      };
+
+      pdf-worker-pdfjs = buildNpmPackage {
+        pname = "${pname}-pdf-worker-pdfjs";
+        src = fetchFromGitHub {
+          owner = "zotero";
+          repo = "pdf.js";
+          rev = "e198a17afc6f56e0a9d48b07e42ec80645a7a0a8";
+          hash = "sha256-FlKII11oPMPka+96Wo9ZjBuNp40i3OMuvlNz8X/r0Lw=";
+        };
+        inherit version npmFlags NODE_OPTIONS meta;
+        npmDepsHash = "sha256-9e90iIKwWyBq68q/CKn+7laJwPFtJaZtblcWpIEDSXw=";
+        makeCacheWritable = true;
+
+        postPatch = ''
+          sed -i '/"name": "pdf.js"/a "version": "1.0.0",' package.json
+          sed -i '/"name": "pdf.js"/a "version": "1.0.0",' package-lock.json
+        '';
+
+        #dontNpmBuild = true;
+
+        buildPhase = ''
+          node_modules/.bin/gulp lib 
+        '';
+
+        postInstall = ''
+          cp -r build $out/lib/node_modules/pdf.js/build
+        '';
+      };
+
+      pdf-reader = buildNpmPackage {
+        pname = "${pname}-pdf-reader";
+        src = fetchFromGitHub {
+          owner = "zotero";
+          repo = "pdf-reader";
+          rev = "3b7f54727fdd8f238281a555988ada4615679b9c";
+          hash = "sha256-Y49bT08Z9ESK3yVkRQT67oU9jygr5xblHgUiX/SwyLE=";
+        };
+        inherit version npmFlags NODE_OPTIONS meta;
+        npmDepsHash = "sha256-tDr2WLnpltWPrlF21M8G/We4zzAXBp4px5xceOVLbhQ=";
+
+        postPatch = ''
+          sed -i 's/npx gulp/#npx gulp/g' scripts/build-pdfjs
+          sed -i 's/npm ci/#npm ci/g' scripts/build-pdfjs
+        '';
+
+        buildPhase = ''
+          rm -rf pdf.js 
+          cp -Lr ${pdf-reader-pdfjs}/lib/node_modules/pdf.js pdf.js
+        '';
+
+        preInstall = ''
+          mkdir -p $out/lib/node_modules/pdf-reader
+          cp -r node_modules $out/lib/node_modules/pdf-reader/node_modules
+        '';
+      };
+
+      pdf-worker = buildNpmPackage {
+        pname = "${pname}-pdf-worker";
+        src = fetchFromGitHub {
+          owner = "zotero";
+          repo = "pdf-worker";
+          rev = "582f5d6cf91c5f09fc7898c3eced0ad32cbfccb1";
+          hash = "sha256-y1nEYGbtZzsc1Hn9B/Cvom3f7+OsYgwOuWFfp5U4gjc=";
+        };
+        inherit version npmFlags NODE_OPTIONS meta;
+        npmDepsHash = "sha256-rO/P7/22erxNeOpR8ph7taKyCeOEG9+U06oOfmPSa3w=";
+
+        postPatch = ''
+          sed -i 's/npx gulp/#npx gulp/g' scripts/build-pdfjs
+          sed -i 's/npm ci/#npm ci/g' scripts/build-pdfjs
+        '';
+
+        buildPhase = ''
+          rm -rf pdf.js 
+          cp -Lr ${pdf-worker-pdfjs}/lib/node_modules/pdf.js pdf.js
+        '';
+
+        preInstall = ''
+          mkdir -p $out/lib/node_modules/pdf-worker
+          cp -r node_modules $out/lib/node_modules/pdf-worker/node_modules
+        '';
+      };
+    in
+    buildNpmPackage {
+      pname = "${pname}-client";
+      inherit src version npmFlags NODE_OPTIONS meta;
+      npmDepsHash = "sha256-b9MCHtt4Ewpt/prEMKtzSbLv3xnP2lnhclu4xDh1QGQ=";
+      nativeBuildInputs = [ rsync ];
+
+      postPatch = ''
+        rm -rf resource/SingleFile 
+        cp -Lr ${single-file}/lib/node_modules/single-file resource/SingleFile
+
+        rm -rf chrome/content/zotero/xpcom/utilities
+        cp -Lr ${xpcom-utilities}/lib/node_modules/@zotero/utilities chrome/content/zotero/xpcom/utilities 
+
+        rm -rf pdf-reader 
+        cp -r ${pdf-reader}/lib/node_modules/pdf-reader pdf-reader
+
+        rm -rf pdf-worker
+        cp -r ${pdf-worker}/lib/node_modules/pdf-worker pdf-worker
+
+        chmod +w . -R
+        
+        (
+          cd pdf-reader
+          rm -rf pdf.js 
+          cp -Lr ${pdf-reader-pdfjs}/lib/node_modules/pdf.js pdf.js
+        )
+        (
+          cd pdf-worker
+          rm -rf pdf.js 
+          cp -Lr ${pdf-worker-pdfjs}/lib/node_modules/pdf.js pdf.js
+        )
+
+        rm -rf translators 
+        cp -Lr ${translators}/lib/node_modules/translators-check translators 
+
+        rm -rf note-editor
+        cp -Lr ${note-editor}/lib/node_modules/zotero-note-editor note-editor
+
+        chmod +w . -R
+
+        find scripts -type f | xargs sed -i 's/npm ci/#npm ci/g'
+        find scripts -type f | xargs sed -i 's/git/#git/g'
+
+        sed -i 's/npm run build/#npm run build/g' scripts/note-editor.js
+      '';
+
+      installPhase = ''
+        mkdir $out
+        cp -r . $out
+      '';
+    };
+
+  zotero-build = stdenv.mkDerivation {
+    pname = "${pname}-build";
+    inherit version meta;
+    src = fetchFromGitHub {
+      owner = "zotero";
+      repo = "zotero-build";
+      rev = "00e854c6588f329b714250e450f4f7f663aa0222";
+      hash = "sha256-Gvt37jObgSQ10GBYjnCLu5XbUAy3oVTkWPvHbhLF+fw=";
+      fetchSubmodules = true;
+    };
+
+    postPatch = ''
+      sed -i -E "/-aL/a '--chmod=Du=rwx'," xpi/build_xpi
+      #sed -i 's/-aL/-L/' xpi/build_xpi
+    '';
+
+    buildInputs = [ python3 rsync perl ];
+
+    buildPhase = ''
+      python3 xpi/build_xpi -s ${zotero-client}/build -c source -m ${rev}
+    '';
+
+    installPhase = ''
+      mkdir $out
+      cp -r . $out
+    '';
+  };
+
+in
+
+stdenv.mkDerivation {
+  inherit pname version meta;
+
+  src = fetchFromGitHub {
+    owner = "zotero";
+    repo = "zotero-standalone-build";
+    rev = "e9ef6bf21d39cc66f1edefdd5b7429bbaf0c5247";
+    hash = "sha256-NcnbqCN6Pti2KuVX79QLrTk2V/3sMxMrbgRzSTluOtM=";
+    fetchSubmodules = true;
+  };
+
+  patches = [ ./fetchxul.patch ];
+
+  postPatch = ''
+    patchShebangs .
+
+    sed -i 's|LINUX_i686_RUNTIME_PATH=.*|LINUX_i686_RUNTIME_PATH="$DIR/xulrunner/firefox"|' config.sh
+    sed -i 's|LINUX_x86_64_RUNTIME_PATH=.*|LINUX_x86_64_RUNTIME_PATH="$DIR/xulrunner/firefox"|' config.sh
+    sed -i 's|ZOTERO_SOURCE_DIR=.*|ZOTERO_SOURCE_DIR="${zotero-client}"|' config.sh
+    sed -i 's|ZOTERO_BUILD_DIR=.*|ZOTERO_BUILD_DIR="${zotero-build}"|' config.sh
+
+    sed -i -E 's|(.*hash=).*|\1${rev}|' scripts/dir_build
+    sed -i '/build_xpi/d' scripts/dir_build
+
+    sed -i -E 's|(rsync -a.*)|\1; chmod -R +w $BUILD_DIR|' build.sh 
+    #sed -i 's|MaxVersion=.*|MaxVersion=111.0|' assets/application.ini 
+  '';
+
+  nativeBuildInputs = [ makeWrapper python3 unzip zip perl rsync wrapGAppsHook ];
+  buildInputs = [ gsettings-desktop-schemas glib gtk3 gnome.adwaita-icon-theme dconf ];
+  configurePhase = ''
+    mkdir xulrunner
+    cp -Lr ${firefox-esr-102-unwrapped}/lib/firefox xulrunner
+    chmod -R +w xulrunner
+
+    cp -Lr ${pdftools} pdftools
+    chmod -R +w pdftools 
+
+    ./fetch_xulrunner.sh -p l
+  '';
+
+  buildPhase = ''
+    chmod -R +w /build
+    scripts/dir_build -p l
+  '';
+
+  installPhase =
+    let
+      desktopItem = makeDesktopItem {
+        name = "${pname}-${version}";
+        exec = "${pname} -url %U";
+        icon = "zotero";
+        comment = meta.description;
+        desktopName = "Zotero";
+        genericName = "Reference Management";
+        categories = [ "Office" "Database" ];
+        startupNotify = true;
+        mimeTypes = [ "x-scheme-handler/zotero" "text/plain" ];
+      };
+    in
+    ''
+      mkdir -p $out/bin
+      cp -Lr staging/Zotero_linux $out/lib
+
+      mkdir -p $out/share/applications
+      cp ${desktopItem}/share/applications/* $out/share/applications/
+      for size in 16 32 48 256; do
+        install -Dm444 staging/Zotero_linux/chrome/icons/default/default$size.png \
+          $out/share/icons/hicolor/''${size}x''${size}/apps/zotero.png
+      done
+
+      makeWrapper "$out/lib/zotero" "$out/bin/${pname}" \
+        --set-default MOZ_ENABLE_WAYLAND 1
+    '';
+}

packages/zotero/fetchxul.patch

@@ -0,0 +1,145 @@
+diff --git a/build.sh b/build.sh
+index a86a4d3..dd7f7d8 100755
+--- a/build.sh
++++ b/build.sh
+@@ -50,6 +50,7 @@ DONE
+ 
+ BUILD_DIR=`mktemp -d`
+ function cleanup {
++	chmod -R +w .
+ 	rm -rf $BUILD_DIR
+ }
+ trap cleanup EXIT
+@@ -138,7 +139,7 @@ BUILD_ID=`date +%Y%m%d%H%M%S`
+ # Paths to Gecko runtimes
+ MAC_RUNTIME_PATH="$CALLDIR/xulrunner/Firefox.app"
+ WIN_RUNTIME_PATH_PREFIX="$CALLDIR/xulrunner/firefox-"
+-LINUX_RUNTIME_PATH_PREFIX="$CALLDIR/xulrunner/firefox-"
++LINUX_RUNTIME_PATH_PREFIX="$CALLDIR/xulrunner/firefox"
+ 
+ base_dir="$BUILD_DIR/base"
+ app_dir="$BUILD_DIR/base/app"
+@@ -167,10 +168,11 @@ elif [ $BUILD_WIN == 1 ]; then
+ 	cp -Rp "${WIN_RUNTIME_PATH_PREFIX}win64"/browser/omni "$app_dir"
+ elif [ $BUILD_LINUX == 1 ]; then
+ 	# Non-arch-specific files, so just use 64-bit version
+-	cp -Rp "${LINUX_RUNTIME_PATH_PREFIX}x86_64"/browser/omni "$app_dir"
++	cp -Rp "${LINUX_RUNTIME_PATH_PREFIX}"/browser/omni "$app_dir"
+ fi
+ set -e
+ cd $omni_dir
++chmod -R +w .
+ # Move some Firefox files that would be overwritten out of the way
+ mv chrome.manifest chrome.manifest-fx
+ mv components components-fx
+@@ -372,7 +374,7 @@ fi
+ 
+ mv omni.ja ..
+ cd "$CALLDIR"
+-rm -rf "$omni_dir"
++#rm -rf "$omni_dir"
+ 
+ # Copy updater.ini
+ cp "$CALLDIR/assets/updater.ini" "$base_dir"
+@@ -794,12 +796,12 @@ fi
+ 
+ # Linux
+ if [ $BUILD_LINUX == 1 ]; then
+-	for arch in "i686" "x86_64"; do
++	for arch in ""; do
+ 		runtime_path="${LINUX_RUNTIME_PATH_PREFIX}${arch}"
+ 		
+ 		# Set up directory
+-		echo 'Building Zotero_linux-'$arch
+-		APPDIR="$STAGE_DIR/Zotero_linux-$arch"
++		echo 'Building Zotero_linux'
++		APPDIR="$STAGE_DIR/Zotero_linux"
+ 		rm -rf "$APPDIR"
+ 		mkdir "$APPDIR"
+ 		
+@@ -815,11 +817,11 @@ if [ $BUILD_LINUX == 1 ]; then
+ 		cp "$CALLDIR/linux/set_launcher_icon" "$APPDIR"
+ 		
+ 		# Use our own updater, because Mozilla's requires updates signed by Mozilla
+-		cp "$CALLDIR/linux/updater-$arch" "$APPDIR"/updater
++		#cp "$CALLDIR/linux/updater$arch" "$APPDIR"/updater
+ 
+ 		# Copy PDF tools and data
+-		cp "$CALLDIR/pdftools/pdftotext-linux-$arch" "$APPDIR/pdftotext"
+-		cp "$CALLDIR/pdftools/pdfinfo-linux-$arch" "$APPDIR/pdfinfo"
++		#cp "$CALLDIR/pdftools/pdftotext-linux-$arch" "$APPDIR/pdftotext"
++		#cp "$CALLDIR/pdftools/pdfinfo-linux-$arch" "$APPDIR/pdfinfo"
+ 		cp -R "$CALLDIR/pdftools/poppler-data" "$APPDIR/"
+ 		
+ 		# Copy app files
+@@ -828,7 +830,8 @@ if [ $BUILD_LINUX == 1 ]; then
+ 		# Add word processor plug-ins
+ 		mkdir "$APPDIR/integration"
+ 		cp -RH "$CALLDIR/modules/zotero-libreoffice-integration/install" "$APPDIR/integration/libreoffice"
+-		
++		chmod -R +w "$APPDIR"
++
+ 		# Delete extraneous files
+ 		find "$APPDIR" -depth -type d -name .git -exec rm -rf {} \;
+ 		find "$APPDIR" \( -name .DS_Store -or -name update.rdf \) -exec rm -f {} \;
+@@ -841,5 +844,5 @@ if [ $BUILD_LINUX == 1 ]; then
+ 		fi
+ 	done
+ fi
+-
++chmod -R +w $BUILD_DIR
+ rm -rf $BUILD_DIR
+diff --git a/fetch_xulrunner.sh b/fetch_xulrunner.sh
+index bbaf7b4..5da8a9b 100755
+--- a/fetch_xulrunner.sh
++++ b/fetch_xulrunner.sh
+@@ -115,14 +115,6 @@ function modify_omni {
+ 	replace_line 'MOZ_UPDATE_CHANNEL:.+' 'MOZ_UPDATE_CHANNEL: "none",' modules/AppConstants.jsm
+ 	replace_line '"https:\/\/[^\/]+mozilla.com.+"' '""' modules/AppConstants.jsm
+ 	
+-	replace_line 'if \(!updateAuto\) \{' 'if (update.type == "major") {
+-      LOG("UpdateService:_selectAndInstallUpdate - prompting because it is a major update");
+-      AUSTLMY.pingCheckCode(this._pingSuffix, AUSTLMY.CHK_SHOWPROMPT_PREF);
+-      Services.obs.notifyObservers(update, "update-available", "show-prompt");
+-      return;
+-    }
+-    if (!updateAuto) {' modules/UpdateService.jsm
+-	
+ 	replace_line 'pref\("network.captive-portal-service.enabled".+' 'pref("network.captive-portal-service.enabled", false);' greprefs.js
+ 	replace_line 'pref\("network.connectivity-service.enabled".+' 'pref("network.connectivity-service.enabled", false);' greprefs.js
+ 	replace_line 'pref\("toolkit.telemetry.server".+' 'pref("toolkit.telemetry.server", "");' greprefs.js
+@@ -363,32 +355,11 @@ if [ $BUILD_WIN == 1 ]; then
+ fi
+ 
+ if [ $BUILD_LINUX == 1 ]; then
+-	GECKO_VERSION="$GECKO_VERSION_LINUX"
+-	DOWNLOAD_URL="https://ftp.mozilla.org/pub/firefox/releases/$GECKO_VERSION"
+-	
+-	rm -rf firefox
+-	
+-	curl -O "$DOWNLOAD_URL/linux-i686/en-US/firefox-$GECKO_VERSION.tar.bz2"
+-	rm -rf firefox-i686
+-	tar xvf firefox-$GECKO_VERSION.tar.bz2
+-	mv firefox firefox-i686
+-	
+-	pushd firefox-i686
+-	modify_omni linux32
+-	popd
+-	
+-	rm "firefox-$GECKO_VERSION.tar.bz2"
+-	
+-	curl -O "$DOWNLOAD_URL/linux-x86_64/en-US/firefox-$GECKO_VERSION.tar.bz2"
+-	rm -rf firefox-x86_64
+-	tar xvf firefox-$GECKO_VERSION.tar.bz2
+-	mv firefox firefox-x86_64
+ 	
+-	pushd firefox-x86_64
+-	modify_omni linux64
++	pushd firefox
++	modify_omni linux
+ 	popd
+ 	
+-	rm "firefox-$GECKO_VERSION.tar.bz2"
+ fi
+ 
+ echo Done